Bibliography
Peer Reviewed Publications
1. Papademetris X, Belhumeur PN. Estimation of motion boundary location and optical flow using dynamic programming. International Conference on Image Processing, Proceedings - Vol I. 1996;1:509-12. doi: 10.1109/icip.1996.559545. PubMed PMID: WOS:A1996BG63E00128. <Go to ISI>://WOS:A1996BG63E00128
https://ieeexplore.ieee.org/document/559545/
2. Papademetris X, Shi PC, Dione DP, Sinusas AJ, Constable RT, Duncan JS. Recovery of soft tissue object deformation from 3D image sequences using biomechanical models. Information Processing in Medical Imaging, Proceedings. 1999;1613:352-7. doi: 10.1007/3-540-48714-x_28. PubMed PMID: WOS:000170515200028. <Go to ISI>://WOS:000170515200028
https://link.springer.com/content/pdf/10.1007%2F3-540-48714-X_28.pdf
3. Papademetris X, Sinusas AJ, Dione DP, Duncan JS. 3D cardiac deformation from ultrasound images. Medical Image Computing and Computer-Assisted Intervention, Miccai'99, Proceedings. 1999;1679:420-9. doi: 10.1007/10704282_46. PubMed PMID: WOS:000171179200046. <Go to ISI>://WOS:000171179200046
https://link.springer.com/content/pdf/10.1007%2F10704282_46.pdf
4. Papademetris X, Sinusas AJ, Dione DP, Constable RT, Duncan JS. Estimating 3D strain from 4D cine-MRI and Echocardiography: In-vivo validation. Medical Image Computing and Computer-Assisted Intervention - Miccai 2000. 2000;1935:678-86. doi: 10.1007/978-3-540-40899-4_70. PubMed PMID: WOS:000171938700070. <Go to ISI>://WOS:000171938700070
https://link.springer.com/content/pdf/10.1007%2F978-3-540-40899-4_70.pdf
5. Papademetris X, Constable R, Onat E, Duncan J, Sinusas A, Dione D. The Active Elastic Model. Inf Process Med Imaging. 2001;2082:36-49. doi: 10.1007/3-540-45729-1_4. http://dx.doi.org/10.1007/3-540-45729-1_4
http://www.springerlink.com/content/jq5ubc2qxrbckdkv/fulltext.pdf
https://link.springer.com/content/pdf/10.1007%2F3-540-45729-1_4.pdf
6. Sinusas AJ, Papademetris X, Constable RT, Dione DP, Slade MD, Shi P, Duncan JS. Quantification of 3-D regional myocardial deformation: shape-based analysis of magnetic resonance images. Am J Physiol Heart Circ Physiol. 2001;281(2):H698-714. Epub 2001/07/17. doi: 10.1152/ajpheart.2001.281.2.H698. PubMed PMID: 11454574. https://www.ncbi.nlm.nih.gov/pubmed/11454574
https://journals.physiology.org/doi/pdf/10.1152/ajpheart.2001.281.2.H698
7. Papademetris X, Sinusas AJ, Dione DP, Duncan JS. Estimation of 3D left ventricular deformation from echocardiography. Medical image analysis. 2001;5(1):17-28. Epub 2001/03/07. doi: 10.1016/s1361-8415(00)00022-0. PubMed PMID: 11231174. https://www.ncbi.nlm.nih.gov/pubmed/11231174
8. Papademetris X, Sinusas AJ, Dione DP, Constable RT, Duncan JS. Estimation of 3-D left ventricular deformation from medical images using biomechanical models. IEEE transactions on medical imaging. 2002;21(7):786-800. Epub 2002/10/11. doi: 10.1109/TMI.2002.801163. PubMed PMID: 12374316. https://www.ncbi.nlm.nih.gov/pubmed/12374316
https://ieeexplore.ieee.org/document/1036023/
9. Kobashi K, Papademetris X, Duncan JS. A new biomechanical model based approach on brain shift compensation. Medical Image Computing and Computer-Assisted Intervention - Miccai 2003, Pt 1. 2003;2878:59-66. doi: 10.1007/978-3-540-39899-8_8. PubMed PMID: WOS:000188592600008. <Go to ISI>://WOS:000188592600008
10. Lin N, Papademetris X, Sinusas AJ, Duncan JS. Analysis of left ventricular motion using a general robust point matching algorithm. Medical Image Computing and Computer-Assisted Intervention - Miccai 2003, Pt 1. 2003;2878:556-63. doi: 10.1007/978-3-540-39899-8_69. PubMed PMID: WOS:000188592600069. <Go to ISI>://WOS:000188592600069
https://link.springer.com/content/pdf/10.1007%2F978-3-540-39899-8_69.pdf
11. Papademetris X, Jackowski AP, Schultz RT, Staib LH, Duncan JS. Computing 3D non-rigid brain registration using extended robust point matching for composite multisubject fMRI analysis. Medical Image Computing and Computer-Assisted Intervention - Miccai 2003, Pt 2. 2003;2879:788-95. doi: 10.1007/978-3-540-39903-2_96. PubMed PMID: WOS:000188180400096. <Go to ISI>://WOS:000188180400096
12. Duncan JS, Papademetris X, Yang J, Jackowski M, Zeng X, Staib LH. Geometric strategies for neuroanatomic analysis from MRI. NeuroImage. 2004;23 Suppl 1:S34-45. Epub 2004/10/27. doi: 10.1016/j.neuroimage.2004.07.027. PubMed PMID: 15501099; PubMed Central PMCID: PMCPMC2832750. https://www.ncbi.nlm.nih.gov/pubmed/15501099
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2832750/pdf/nihms-178024.pdf
13. Okuda H, Shkarin P, Behar K, Duncan JS, Papademetris X. Construction of a 3D volumetric probabilistic model of the mouse kidney from MRI. Medical Image Computing and Computer-Assisted Intervention - Miccai 2004, Pt 2, Proceedings. 2004;3217:1052-4. doi: 10.1007/978-3-540-30136-3_134. PubMed PMID: WOS:000224322400134. <Go to ISI>://WOS:000224322400134
https://link.springer.com/content/pdf/10.1007%2F978-3-540-30136-3_134.pdf
14. Papademetris X, Jackowski AP, Schultz RT, Staib LH, Duncan JS. Integrated intensity and point-feature nonrigid registration. Medical Image Computing and Computer-Assisted Intervention - Miccai 2004, Pt 1, Proceedings. 2004;3216(2004):763-70. doi: 10.1007/978-3-540-30135-6_93. PubMed PMID: WOS:000224321100093; PubMed Central PMCID: PMC2869095. <Go to ISI>://WOS:000224321100093
https://link.springer.com/content/pdf/10.1007%2F978-3-540-30135-6_93.pdf
15. Yang J, Papademetris X, Staib LH, Schultz RT, Duncan JS. Functional brain image analysis using joint function-structure priors. Medical Image Computing and Computer-Assisted Intervention - Miccai 2004, Pt 2, Proceedings. 2004;3217:736-44. doi: 10.1007/978-3-540-30136-3_90. PubMed PMID: WOS:000224322400090; PubMed Central PMCID: PMC2883266. <Go to ISI>://WOS:000224322400090
https://link.springer.com/content/pdf/10.1007%2F978-3-540-30136-3_90.pdf
16. Jackowski M, Papademetris X, Dobrucki LW, Sinusas AJ, Staib LH. Characterizing vascular connectivity from microCT images. Medical image computing and computer-assisted intervention : MICCAI International Conference on Medical Image Computing and Computer-Assisted Intervention. 2005;8(Pt 2):701-8. Epub 2006/05/12. doi: 10.1007/11566489_86. PubMed PMID: 16686021. https://www.ncbi.nlm.nih.gov/pubmed/16686021
https://link.springer.com/content/pdf/10.1007%2F11566489_86.pdf
17. Papademetris X, Shkarin P, Staib LH, Behar KL. Regional whole body fat quantification in mice. Information processing in medical imaging : proceedings of the conference. 2005;19:369-80. Epub 2007/03/16. doi: 10.1007/11505730_31. PubMed PMID: 17354710. https://www.ncbi.nlm.nih.gov/pubmed/17354710
https://link.springer.com/content/pdf/10.1007%2F11505730_31.pdf
18. Suzuki T, Katayama Y, Kobayashi E, Sakuma I. Compact forceps manipulator using friction wheel mechanism and gimbals mechanism for laparoscopic surgery. Medical image computing and computer-assisted intervention : MICCAI International Conference on Medical Image Computing and Computer-Assisted Intervention. 2005;8(Pt 2):81-8. Epub 2006/05/12. doi: 10.1007/11566489_11. PubMed PMID: 16685946. https://www.ncbi.nlm.nih.gov/pubmed/16685946
https://link.springer.com/content/pdf/10.1007%2F11566489_11.pdf
19. Wang J, Qiu M, Papademetris X, Todd Constable R. Brain tissue segmentation based on corrected gray-scale analysis. Conference proceedings : Annual International Conference of the IEEE Engineering in Medicine and Biology Society IEEE Engineering in Medicine and Biology Society Conference. 2005;2005:3027-30. Epub 2007/02/07. doi: 10.1109/IEMBS.2005.1617112. PubMed PMID: 17282881. https://www.ncbi.nlm.nih.gov/pubmed/17282881
https://ieeexplore.ieee.org/document/1617112/
20. Blumberg HP, Fredericks C, Wang F, Kalmar JH, Spencer L, Papademetris X, Pittman B, Martin A, Peterson BS, Fulbright RK, Krystal JH. Preliminary evidence for persistent abnormalities in amygdala volumes in adolescents and young adults with bipolar disorder. Bipolar Disord. 2005;7(6):570-6. Epub 2006/01/13. doi: 10.1111/j.1399-5618.2005.00264.x. PubMed PMID: 16403182; PubMed Central PMCID: PMCPMC2291299. https://www.ncbi.nlm.nih.gov/pubmed/16403182
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2291299/pdf/nihms44492.pdf
21. Weiss R, Taksali SE, Dufour S, Yeckel CW, Papademetris X, Cline G, Tamborlane WV, Dziura J, Shulman GI, Caprio S. The "obese insulin-sensitive" adolescent: importance of adiponectin and lipid partitioning. J Clin Endocrinol Metab. 2005;90(6):3731-7. Epub 2005/03/31. doi: 10.1210/jc.2004-2305. PubMed PMID: 15797955. https://www.ncbi.nlm.nih.gov/pubmed/15797955
22. DeLorenzo C, Papademetris X, Vives KP, Spencer D, Duncan JS. Combined feature/intensity-based brain shift compensation using stereo guidance. Biomedical Imaging: Nano to Macro, 2006 3rd IEEE International Symposium on. 2006:335-8. doi: 10.1109/isbi.2006.1624921. http://ieeexplore.ieee.org/ielx5/10818/34114/01624921.pdf?tp=&arnumber=1624921&isnumber=34114
http://dx.doi.org/10.1109/isbi.2006.1624921
https://ieeexplore.ieee.org/document/1624921/
23. DeLorenzo C, Papademetris X, Wu K, Vives KP, Spencer D, Duncan JS. Nonrigid 3D brain registration using intensity/feature information. Medical image computing and computer-assisted intervention : MICCAI International Conference on Medical Image Computing and Computer-Assisted Intervention. 2006;9(Pt 1):932-9. Epub 2007/03/16. doi: 10.1007/11866565_114. PubMed PMID: 17354980; PubMed Central PMCID: PMCPMC2864121. https://www.ncbi.nlm.nih.gov/pubmed/17354980
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2864121/pdf/nihms185340.pdf
24. Papademetris X, Vives KP, DiStasio M, Staib LH, Neff M, Flossman S, Frielinghaus N, Zaveri H, Novotny EJ, Blumenfeld H, Constable RT, Hetherington HP, Duckrow RB, Spencer SS, Spencer DD, Duncan JS. Development of a research interface for image guided intervention: Initial application to epilepsy neurosurgery. 2006 3rd Ieee International Symposium on Biomedical Imaging: Macro to Nano, Vols 1-3. 2006:490-+. doi: 10.1109/isbi.2006.1624960. PubMed PMID: WOS:000244446000124. <Go to ISI>://WOS:000244446000124
https://ieeexplore.ieee.org/document/1624960/
25. Scharff E, Papademetris X, Hetherington HP, Pan JW, Zaveri H, Blumenfeld H, Duckrow RB, Spencer SS, Spencer DD, Duncan JS, Novotny EJ. Correlation of magnetic resonance spectroscopic imaging and intracranial EEG localization of seizures. 7. Biomedical Imaging: Nano to Macro, 2006 3rd IEEE International Symposium on. 2006:510-3. doi: 10.1109/isbi.2006.1624965. http://ieeexplore.ieee.org/ielx5/10818/34114/01624965.pdf?tp=&arnumber=1624965&isnumber=34114
http://dx.doi.org/10.1109/isbi.2006.1624965
https://ieeexplore.ieee.org/document/1624965/
26. Staib LH, Jackowski M, Papademetris X. Brain Shape Characterization from Deformation. Proc IEEE Int Symp Biomed Imaging. 2006;3(1625124):1140-3. Epub 2006/01/01. doi: 10.1109/isbi.2006.1625124. PubMed PMID: 20216923; PubMed Central PMCID: PMCPMC2834244. https://www.ncbi.nlm.nih.gov/pubmed/20216923
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2834244/pdf/nihms178051.pdf
27. Scouten A, Papademetris X, Constable RT. Spatial resolution, signal-to-noise ratio, and smoothing in multi-subject functional MRI studies. NeuroImage. 2006;30(3):787-93. Epub 2005/12/14. doi: 10.1016/j.neuroimage.2005.10.022. PubMed PMID: 16343951. https://www.ncbi.nlm.nih.gov/pubmed/16343951
28. Koch KM, Papademetris X, Rothman DL, de Graaf RA. Rapid calculations of susceptibility-induced magnetostatic field perturbations for in vivo magnetic resonance. Phys Med Biol. 2006;51(24):6381-402. Epub 2006/12/07. doi: 10.1088/0031-9155/51/24/007. PubMed PMID: 17148824. https://www.ncbi.nlm.nih.gov/pubmed/17148824
https://iopscience.iop.org/article/10.1088/0031-9155/51/24/007
https://iopscience.iop.org/article/10.1088/0031-9155/51/24/007/pdf
29. Burgert TS, Taksali SE, Dziura J, Goodman TR, Yeckel CW, Papademetris X, Constable RT, Weiss R, Tamborlane WV, Savoye M, Seyal AA, Caprio S. Alanine aminotransferase levels and fatty liver in childhood obesity: associations with insulin resistance, adiponectin, and visceral fat. J Clin Endocrinol Metab. 2006;91(11):4287-94. Epub 2006/08/17. doi: 10.1210/jc.2006-1010. PubMed PMID: 16912127. https://www.ncbi.nlm.nih.gov/pubmed/16912127
30. Bathula DR, Papademetris X, Duncan JS. Level Set Based Clustering for Analysis of Functional Mri Data. Proc IEEE Int Symp Biomed Imaging. 2007;4(4193311):416-9. Epub 2007/01/01. doi: 10.1109/ISBI.2007.356877. PubMed PMID: 20216927; PubMed Central PMCID: PMCPMC2834251. https://www.ncbi.nlm.nih.gov/pubmed/20216927
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2834251/pdf/nihms-178080.pdf
31. DeLorenzo C, Papademetris X, Staib LH, Vives KP, Spencer DD, Duncan JS. Nonrigid intraoperative cortical surface tracking using game theory. 2007 Ieee 11th International Conference on Computer Vision, Vols 1-6. 2007:2393-+. doi: 10.1109/iccv.2007.4409135. PubMed PMID: WOS:000255099302049. <Go to ISI>://WOS:000255099302049
https://ieeexplore.ieee.org/document/4409135/
32. DeLorenzo C, Papademetris X, Vives KP, Spencer DD, Duncan JS. A comprehensive system for intraoperative 3D brain deformation recovery. Medical image computing and computer-assisted intervention : MICCAI International Conference on Medical Image Computing and Computer-Assisted Intervention. 2007;10(Pt 2):553-61. Epub 2007/11/30. doi: 10.1007/978-3-540-75759-7_67. PubMed PMID: 18044612; PubMed Central PMCID: PMCPMC2864112. https://www.ncbi.nlm.nih.gov/pubmed/18044612
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2864112/pdf/nihms185343.pdf
33. DeLorenzo C, Papademetris X, Vives KP, Spencer DD, Duncan JS. A realistic brain phantom for 3D deformation recovery. 2007 4th Ieee International Symposium on Biomedical Imaging : Macro to Nano, Vols 1-3. 2007:9-+. doi: Doi 10.1109/Isbi.2007.356775. PubMed PMID: WOS:000252957300003. <Go to ISI>://WOS:000252957300003
https://ieeexplore.ieee.org/document/4193209/
34. Greene WH, Chelikani S, Papademetris X, Knisely JP, Duncan J. A Constrained Non-Rigid Registration Algorithm for Application in Prostate Radiotherapy. Proc IEEE Int Symp Biomed Imaging. 2007;4193392:740-3. Epub 2007/01/01. doi: 10.1109/ISBI.2007.356958. PubMed PMID: 20011132; PubMed Central PMCID: PMCPMC2792992. https://www.ncbi.nlm.nih.gov/pubmed/20011132
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2792992/pdf/nihms-159114.pdf
35. Mounzer R, Shkarin P, Papademetris X, Constable T, Ruddle NH, Fahmy TM. Dynamic imaging of lymphatic vessels and lymph nodes using a bimodal nanoparticulate contrast agent. Lymphat Res Biol. 2007;5(3):151-8. Epub 2007/11/27. doi: 10.1089/lrb.2007.5302. PubMed PMID: 18035933. https://www.ncbi.nlm.nih.gov/pubmed/18035933
36. Qian XN, Brennan MR, Dione DP, Dobrucki WL, Jackowski MP, Breuer CK, Sinusas AJ, Papademetris X. Detection of complex vascular structures using polar neighborhood intensity profile. 2007 Ieee 11th International Conference on Computer Vision, Vols 1-6. 2007:2681-+. doi: 10.1109/ICCV.2007.4409172. PubMed PMID: WOS:000255099302086. <Go to ISI>://WOS:000255099302086
https://ieeexplore.ieee.org/document/4409172/
37. Yun Z, Papademetris X, Duncan JS, Sinusas A. CARDIAC MR IMAGE SEGMENTATION WITH INCOMPRESSIBILITY CONSTRAINT. Biomedical Imaging: From Nano to Macro, 2007 ISBI 2007 4th IEEE International Symposium on. 2007:185-8. doi: 10.1109/isbi.2007.356819. http://ieeexplore.ieee.org/ielx5/4193196/4193197/04193253.pdf?tp=&arnumber=4193253&isnumber=4193197
http://dx.doi.org/10.1109/isbi.2007.356819
https://ieeexplore.ieee.org/document/4193253/
38. Yun Z, Papademetris X, Sinusas A, Duncan JS. Local Shape Registration Using Boundary-Constrained Match of Skeletons. Computer Vision and Pattern Recognition, 2007 CVPR '07 IEEE Conference on. 2007:1-8. doi: 10.1109/cvpr.2007.383427. http://ieeexplore.ieee.org/ielx5/4269955/4269956/04270425.pdf?tp=&arnumber=4270425&isnumber=4269956
http://dx.doi.org/10.1109/cvpr.2007.383427
https://ieeexplore.ieee.org/document/4270425/
39. Zhu Y, Papademetris X, Sinusas A, Duncan JS. Segmentation of myocardial volumes from real-time 3D echocardiography using an incompressibility constraint. Medical image computing and computer-assisted intervention : MICCAI International Conference on Medical Image Computing and Computer-Assisted Intervention. 2007;10(Pt 1):44-51. Epub 2007/12/07. doi: 10.1007/978-3-540-75757-3_6. PubMed PMID: 18051042. https://www.ncbi.nlm.nih.gov/pubmed/18051042
https://link.springer.com/content/pdf/10.1007%2F978-3-540-75757-3_6.pdf
40. Petersen KF, Dufour S, Savage DB, Bilz S, Solomon G, Yonemitsu S, Cline GW, Befroy D, Zemany L, Kahn BB, Papademetris X, Rothman DL, Shulman GI. The role of skeletal muscle insulin resistance in the pathogenesis of the metabolic syndrome. Proceedings of the National Academy of Sciences of the United States of America. 2007;104(31):12587-94. Epub 2007/07/21. doi: 10.1073/pnas.0705408104. PubMed PMID: 17640906; PubMed Central PMCID: PMCPMC1924794. https://www.ncbi.nlm.nih.gov/pubmed/17640906
https://www.pnas.org/content/pnas/104/31/12587.full.pdf
41. Bathula DR, Tagare HD, Staib LH, Papademetris X, Schultz RT, Duncan JS. Bayesian analysis of fMRI data with ICA based spatial prior. Medical image computing and computer-assisted intervention : MICCAI International Conference on Medical Image Computing and Computer-Assisted Intervention. 2008;11(Pt 2):246-54. Epub 2008/11/06. doi: 10.1007/978-3-540-85990-1_30. PubMed PMID: 18982612; PubMed Central PMCID: PMCPMC2864117. https://www.ncbi.nlm.nih.gov/pubmed/18982612
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2864117/pdf/nihms-106892.pdf
42. Greene WH, Chelikani S, Papademetris X, Staib LH, Knisely JP, Duncan J. Tracking Organ Overlap for a Constrained Non-Rigid Registration Algorithm. Proc IEEE Int Symp Biomed Imaging. 2008;4541207:1159. Epub 2008/01/01. doi: 10.1109/ISBI.2008.4541207. PubMed PMID: 20126424; PubMed Central PMCID: PMCPMC2814434. https://www.ncbi.nlm.nih.gov/pubmed/20126424
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2814434/pdf/nihms159116.pdf
43. Greene WH, Chelikani S, Purushothaman K, Chen Z, Knisely JP, Staib LH, Papademetris X, Duncan J. A constrained non-rigid registration algorithm for use in prostate image-guided radiotherapy. Medical image computing and computer-assisted intervention : MICCAI International Conference on Medical Image Computing and Computer-Assisted Intervention. 2008;11(Pt 1):780-8. Epub 2008/11/05. doi: 10.1007/978-3-540-85988-8_93. PubMed PMID: 18979817; PubMed Central PMCID: PMCPMC2790815. https://www.ncbi.nlm.nih.gov/pubmed/18979817
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2790815/pdf/nihms-159113.pdf
44. Yun Z, Papademetris X, Sinusas AJ, Duncan JS. Integrated segmentation and motion analysis of cardiac MR images using a subject-specific dynamical model. Computer Vision and Pattern Recognition Workshops, 2008 CVPRW '08 IEEE Computer Society Conference on. 2008:1-8. doi: 10.1109/cvprw.2008.4563007. http://ieeexplore.ieee.org/ielx5/4558053/4562948/04563007.pdf?tp=&arnumber=4563007&isnumber=4562948
http://dx.doi.org/10.1109/cvprw.2008.4563007
https://ieeexplore.ieee.org/document/4563007/
45. Yun Z, Ping Y, Papademetris X, Sinusas AJ, Duncan JS. Integrated segmentation and deformation analysis of 4-D cardiac MR images. Biomedical Imaging: From Nano to Macro, 2008 ISBI 2008 5th IEEE International Symposium on. 2008:1437-40. doi: 10.1109/isbi.2008.4541277. http://ieeexplore.ieee.org/ielx5/4534844/4540908/04541277.pdf?tp=&arnumber=4541277&isnumber=4540908
http://dx.doi.org/10.1109/isbi.2008.4541277
https://ieeexplore.ieee.org/document/4541277/
46. Zhu Y, Papademetris X, Sinusas A, Duncan JS. Segmentation of Left Ventricle From 3D Cardiac MR Image Sequences Using A Subject-Specific Dynamical Model. Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit. 2008;2008:1-8. Epub 2008/01/01. doi: 10.1109/CVPR.2008.4587433. PubMed PMID: 20052308; PubMed Central PMCID: PMCPMC2801445. https://www.ncbi.nlm.nih.gov/pubmed/20052308
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2801445/pdf/nihms159128.pdf
47. Zhu Y, Papademetris X, Sinusas AJ, Duncan JS. Bidirectional segmentation of three-dimensional cardiac MR images using a subject-specific dynamical model. Medical image computing and computer-assisted intervention : MICCAI International Conference on Medical Image Computing and Computer-Assisted Intervention. 2008;11(Pt 2):450-7. Epub 2008/11/06. doi: 10.1007/978-3-540-85990-1_54. PubMed PMID: 18982636; PubMed Central PMCID: PMCPMC2829658. https://www.ncbi.nlm.nih.gov/pubmed/18982636
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2829658/pdf/nihms159117.pdf
48. Meltzer JA, Zaveri HP, Goncharova, II, Distasio MM, Papademetris X, Spencer SS, Spencer DD, Constable RT. Effects of working memory load on oscillatory power in human intracranial EEG. Cerebral cortex (New York, NY : 1991). 2008;18(8):1843-55. Epub 2007/12/07. doi: 10.1093/cercor/bhm213. PubMed PMID: 18056698; PubMed Central PMCID: PMCPMC2474453. https://www.ncbi.nlm.nih.gov/pubmed/18056698
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2474453/pdf/bhm213.pdf
49. Wang F, Jackowski M, Kalmar JH, Chepenik LG, Tie K, Qiu M, Gong G, Pittman BP, Jones MM, Shah MP, Spencer L, Papademetris X, Constable RT, Blumberg HP. Abnormal anterior cingulum integrity in bipolar disorder determined through diffusion tensor imaging. The British journal of psychiatry : the journal of mental science. 2008;193(2):126-9. Epub 2008/08/02. doi: 10.1192/bjp.bp.107.048793. PubMed PMID: 18669996; PubMed Central PMCID: PMCPMC2732002. https://www.ncbi.nlm.nih.gov/pubmed/18669996
50. Lacadie CM, Fulbright RK, Rajeevan N, Constable RT, Papademetris X. More accurate Talairach coordinates for neuroimaging using non-linear registration. NeuroImage. 2008;42(2):717-25. Epub 2008/06/24. doi: 10.1016/j.neuroimage.2008.04.240. PubMed PMID: 18572418; PubMed Central PMCID: PMCPMC2603575. https://www.ncbi.nlm.nih.gov/pubmed/18572418
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2603575/pdf/nihms67591.pdf
51. Taksali SE, Caprio S, Dziura J, Dufour S, Cali AM, Goodman TR, Papademetris X, Burgert TS, Pierpont BM, Savoye M, Shaw M, Seyal AA, Weiss R. High visceral and low abdominal subcutaneous fat stores in the obese adolescent: a determinant of an adverse metabolic phenotype. Diabetes. 2008;57(2):367-71. Epub 2007/11/06. doi: 10.2337/db07-0932. PubMed PMID: 17977954. https://www.ncbi.nlm.nih.gov/pubmed/17977954
https://diabetes.diabetesjournals.org/content/diabetes/57/2/367.full.pdf
52. Nelson GN, Roh JD, Mirensky TL, Wang Y, Yi T, Tellides G, Pober JS, Shkarin P, Shapiro EM, Saltzman WM, Papademetris X, Fahmy TM, Breuer CK. Initial evaluation of the use of USPIO cell labeling and noninvasive MR monitoring of human tissue-engineered vascular grafts in vivo. FASEB J. 2008;22(11):3888-95. Epub 2008/08/20. doi: 10.1096/fj.08-107367. PubMed PMID: 18711027; PubMed Central PMCID: PMCPMC2574029. https://www.ncbi.nlm.nih.gov/pubmed/18711027
https://faseb.onlinelibrary.wiley.com/doi/pdfdirect/10.1096/fj.08-107367?download=true
53. Joshi A, Qian X, Dione DP, Bulsara KR, Breuer CK, Sinusas AJ, Papademetris X. Effective visualization of complex vascular structures using a non-parametric vessel detection method. IEEE Trans Vis Comput Graph. 2008;14(6):1603-10. Epub 2008/11/08. doi: 10.1109/TVCG.2008.123. PubMed PMID: 18989016; PubMed Central PMCID: PMCPMC2636705. https://www.ncbi.nlm.nih.gov/pubmed/18989016
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2636705/pdf/nihms-86036.pdf
54. Joshi A, Scheinost D, Vives KP, Spencer DD, Staib LH, Papademetris X. Novel interaction techniques for neurosurgical planning and stereotactic navigation. IEEE Trans Vis Comput Graph. 2008;14(6):1587-94. Epub 2008/11/08. doi: 10.1109/TVCG.2008.150. PubMed PMID: 18989014; PubMed Central PMCID: PMCPMC2633029. https://www.ncbi.nlm.nih.gov/pubmed/18989014
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2633029/pdf/nihms-87556.pdf
55. Wang F, Kalmar JH, Edmiston E, Chepenik LG, Bhagwagar Z, Spencer L, Pittman B, Jackowski M, Papademetris X, Constable RT, Blumberg HP. Abnormal corpus callosum integrity in bipolar disorder: a diffusion tensor imaging study. Biological psychiatry. 2008;64(8):730-3. Epub 2008/07/16. doi: 10.1016/j.biopsych.2008.06.001. PubMed PMID: 18620337; PubMed Central PMCID: PMCPMC2586998. https://www.ncbi.nlm.nih.gov/pubmed/18620337
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2586998/pdf/nihms74465.pdf
56. Brennan MP, Dardik A, Hibino N, Roh JD, Nelson GN, Papademitris X, Shinoka T, Breuer CK. Tissue-engineered vascular grafts demonstrate evidence of growth and development when implanted in a juvenile animal model. Ann Surg. 2008;248(3):370-7. Epub 2008/09/16. doi: 10.1097/SLA.0b013e318184dcbd. PubMed PMID: 18791357; PubMed Central PMCID: PMCPMC2726802. https://www.ncbi.nlm.nih.gov/pubmed/18791357
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2726802/pdf/nihms120254.pdf
57. Ho HP, Papademetris X, Wang F, Blumberg HP, Staib LH. Volumetric shape model for oriented tubular structure from DTI data. Medical image computing and computer-assisted intervention : MICCAI International Conference on Medical Image Computing and Computer-Assisted Intervention. 2009;12(Pt 2):18-25. Epub 2009/01/01. doi: 10.1007/978-3-642-04271-3_3. PubMed PMID: 20426091; PubMed Central PMCID: PMCPMC2863144. https://www.ncbi.nlm.nih.gov/pubmed/20426091
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58. Jiang Y, Edmiston E, Wang F, Blumberg HP, Papademetris X, Staib LH. Improving the Reliability of Shape Comparison by Perturbation. Proc IEEE Int Symp Biomed Imaging. 2009;5193140:686-9. Epub 2009/01/01. doi: 10.1109/ISBI.2009.5193140. PubMed PMID: 20333326; PubMed Central PMCID: PMCPMC2843157. https://www.ncbi.nlm.nih.gov/pubmed/20333326
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2843157/pdf/nihms178254.pdf
59. Suh JW, Scheinost D, Dione DP, Dobrucki LW, Sinusas AJ, Papademetris X. A non-rigid registration method for serial microCT mouse hindlimb images. Medical image computing and computer-assisted intervention : MICCAI International Conference on Medical Image Computing and Computer-Assisted Intervention. 2009;12(Pt 1):688-95. Epub 2009/01/01. doi: 10.1007/978-3-642-04268-3_85. PubMed PMID: 20426048; PubMed Central PMCID: PMCPMC2856964. https://www.ncbi.nlm.nih.gov/pubmed/20426048
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2856964/pdf/nihms180968.pdf
60. Zhu Y, Papademetris X, Sinusas AJ, Duncan JS. A Dynamical Shape Prior for LV Segmentation from RT3D Echocardiography. Medical image computing and computer-assisted intervention : MICCAI International Conference on Medical Image Computing and Computer-Assisted Intervention. 2009;5761:206-13. Epub 2010/01/08. doi: 10.1007/978-3-642-04268-3_26. PubMed PMID: 20054422; PubMed Central PMCID: PMCPMC2801876. https://www.ncbi.nlm.nih.gov/pubmed/20054422
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2801876/pdf/nihms159127.pdf
61. Criscione JM, Le BL, Stern E, Brennan M, Rahner C, Papademetris X, Fahmy TM. Self-assembly of pH-responsive fluorinated dendrimer-based particulates for drug delivery and noninvasive imaging. Biomaterials. 2009;30(23-24):3946-55. Epub 2009/05/16. doi: 10.1016/j.biomaterials.2009.04.014. PubMed PMID: 19443028. https://www.ncbi.nlm.nih.gov/pubmed/19443028
62. Dobrucki LW, Dione DP, Kalinowski L, Dione D, Mendizabal M, Yu J, Papademetris X, Sessa WC, Sinusas AJ. Serial noninvasive targeted imaging of peripheral angiogenesis: validation and application of a semiautomated quantitative approach. Journal of nuclear medicine : official publication, Society of Nuclear Medicine. 2009;50(8):1356-63. Epub 2009/07/21. doi: 10.2967/jnumed.108.060822. PubMed PMID: 19617325; PubMed Central PMCID: PMCPMC3758240. https://www.ncbi.nlm.nih.gov/pubmed/19617325
https://jnm.snmjournals.org/content/jnumed/50/8/1356.full.pdf
63. Chahboune H, Mishra AM, DeSalvo MN, Staib LH, Purcaro M, Scheinost D, Papademetris X, Fyson SJ, Lorincz ML, Crunelli V, Hyder F, Blumenfeld H. DTI abnormalities in anterior corpus callosum of rats with spike-wave epilepsy. NeuroImage. 2009;47(2):459-66. Epub 2009/04/29. doi: 10.1016/j.neuroimage.2009.04.060. PubMed PMID: 19398019; PubMed Central PMCID: PMCPMC2712639. https://www.ncbi.nlm.nih.gov/pubmed/19398019
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2712639/pdf/nihms115314.pdf
64. Tokuda J, Fischer GS, Papademetris X, Yaniv Z, Ibanez L, Cheng P, Liu H, Blevins J, Arata J, Golby AJ, Kapur T, Pieper S, Burdette EC, Fichtinger G, Tempany CM, Hata N. OpenIGTLink: an open network protocol for image-guided therapy environment. Int J Med Robot. 2009;5(4):423-34. Epub 2009/07/22. doi: 10.1002/rcs.274. PubMed PMID: 19621334; PubMed Central PMCID: PMCPMC2811069. https://www.ncbi.nlm.nih.gov/pubmed/19621334
https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/rcs.274?download=true
65. Welborn BL, Papademetris X, Reis DL, Rajeevan N, Bloise SM, Gray JR. Variation in orbitofrontal cortex volume: relation to sex, emotion regulation and affect. Soc Cogn Affect Neurosci. 2009;4(4):328-39. Epub 2009/12/19. doi: 10.1093/scan/nsp028. PubMed PMID: 20019072; PubMed Central PMCID: PMCPMC2799952. https://www.ncbi.nlm.nih.gov/pubmed/20019072
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2799952/pdf/nsp028.pdf
66. Qian X, Brennan MP, Dione DP, Dobrucki WL, Jackowski MP, Breuer CK, Sinusas AJ, Papademetris X. A non-parametric vessel detection method for complex vascular structures. Medical image analysis. 2009;13(1):49-61. Epub 2008/08/06. doi: 10.1016/j.media.2008.05.005. PubMed PMID: 18678521; PubMed Central PMCID: PMCPMC2614119. https://www.ncbi.nlm.nih.gov/pubmed/18678521
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2614119/pdf/nihms84464.pdf
67. Papademetris X, DeLorenzo C, Flossmann S, Neff M, Vives KP, Spencer DD, Staib LH, Duncan JS. From medical image computing to computer-aided intervention: development of a research interface for image-guided navigation. Int J Med Robot. 2009;5(2):147-57. Epub 2009/03/21. doi: 10.1002/rcs.241. PubMed PMID: 19301361; PubMed Central PMCID: PMCPMC2796181. https://www.ncbi.nlm.nih.gov/pubmed/19301361
https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/rcs.241?download=true
68. Scheinost D, Blumenfeld H, Papademetris X. An Improved Unbiased Method for Diffspect Quantification in Epilepsy. Proc IEEE Int Symp Biomed Imaging. 2009;2009:927-30. Epub 2009/06/01. doi: 10.1109/isbi.2009.5193205. PubMed PMID: 20706559; PubMed Central PMCID: PMCPMC2920136. https://www.ncbi.nlm.nih.gov/pubmed/20706559
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2920136/pdf/nihms180994.pdf
69. Jiang Y, Edmiston E, Wang F, Blumberg HP, Staib LH, Papademetris X. Shape Comparison Using Perturbing Shape Registration. Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit. 2009;2009:683-90. Epub 2010/04/14. doi: 10.1109/CVPRW.2009.5206598. PubMed PMID: 20386618; PubMed Central PMCID: PMCPMC2852275. https://www.ncbi.nlm.nih.gov/pubmed/20386618
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2852275/pdf/nihms-180992.pdf
70. Chepenik LG, Fredericks C, Papademetris X, Spencer L, Lacadie C, Wang F, Pittman B, Duncan JS, Staib LH, Duman RS, Gelernter J, Blumberg HP. Effects of the brain-derived neurotrophic growth factor val66met variation on hippocampus morphology in bipolar disorder. Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology. 2009;34(4):944-51. Epub 2008/08/16. doi: 10.1038/npp.2008.107. PubMed PMID: 18704093; PubMed Central PMCID: PMCPMC2837582. https://www.ncbi.nlm.nih.gov/pubmed/18704093
https://www.nature.com/articles/npp2008107.pdf
71. Kalmar JH, Wang F, Spencer L, Edmiston E, Lacadie CM, Martin A, Constable RT, Duncan JS, Staib LH, Papademetris X, Blumberg HP. Preliminary evidence for progressive prefrontal abnormalities in adolescents and young adults with bipolar disorder. J Int Neuropsychol Soc. 2009;15(3):476-81. Epub 2009/05/01. doi: 10.1017/S1355617709090584. PubMed PMID: 19402934; PubMed Central PMCID: PMCPMC2852397. https://www.ncbi.nlm.nih.gov/pubmed/19402934
72. Womer FY, Wang F, Chepenik LG, Kalmar JH, Spencer L, Edmiston E, Pittman BP, Constable RT, Papademetris X, Blumberg HP. Sexually dimorphic features of vermis morphology in bipolar disorder. Bipolar Disord. 2009;11(7):753-8. Epub 2009/10/21. doi: 10.1111/j.1399-5618.2009.00745.x. PubMed PMID: 19839998; PubMed Central PMCID: PMCPMC2844245. https://www.ncbi.nlm.nih.gov/pubmed/19839998
https://onlinelibrary.wiley.com/doi/pdfdirect/10.1111/j.1399-5618.2009.00745.x?download=true
73. Greene WH, Chelikani S, Purushothaman K, Knisely JP, Chen Z, Papademetris X, Staib LH, Duncan JS. Constrained non-rigid registration for use in image-guided adaptive radiotherapy. Medical image analysis. 2009;13(5):809-17. Epub 2009/08/18. doi: 10.1016/j.media.2009.07.004. PubMed PMID: 19682945; PubMed Central PMCID: PMCPMC2771756. https://www.ncbi.nlm.nih.gov/pubmed/19682945
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2771756/pdf/nihms-143644.pdf
74. Lu C, Chelikani S, Chen Z, Papademetris X, Staib LH, Duncan JS. Integrated segmentation and nonrigid registration for application in prostate image-guided radiotherapy. Medical image computing and computer-assisted intervention : MICCAI International Conference on Medical Image Computing and Computer-Assisted Intervention. 2010;13(Pt 1):53-60. Epub 2010/10/01. doi: 10.1007/978-3-642-15705-9_7. PubMed PMID: 20879214. https://www.ncbi.nlm.nih.gov/pubmed/20879214
https://link.springer.com/content/pdf/10.1007%2F978-3-642-15705-9_7.pdf
75. Scheinost D, Teisseyre TZ, Distasio M, DeSalvo MN, Papademetris X, Blumenfeld H. New open-source ictal SPECT analysis method implemented in BioImage Suite. Epilepsia. 2010;51(4):703-7. Epub 2010/01/16. doi: 10.1111/j.1528-1167.2009.02425.x. PubMed PMID: 20074234; PubMed Central PMCID: PMCPMC2963625. https://www.ncbi.nlm.nih.gov/pubmed/20074234
https://onlinelibrary.wiley.com/doi/pdfdirect/10.1111/j.1528-1167.2009.02425.x?download=true
76. Suh JW, Scheinost D, Qian X, Sinusas AJ, Breuer CK, Papademetris X. Serial Nonrigid Vascular Registration Using Weighted Normalized Mutual Information. Proc IEEE Int Symp Biomed Imaging. 2010;2010:25. Epub 2011/04/12. doi: 10.1109/ISBI.2010.5490422. PubMed PMID: 21479163; PubMed Central PMCID: PMCPMC3071602. https://www.ncbi.nlm.nih.gov/pubmed/21479163
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3071602/pdf/nihms-284762.pdf
77. Shen X, Papademetris X, Constable RT. Graph-theory based parcellation of functional subunits in the brain from resting-state fMRI data. NeuroImage. 2010;50(3):1027-35. Epub 2010/01/12. doi: 10.1016/j.neuroimage.2009.12.119. PubMed PMID: 20060479; PubMed Central PMCID: PMCPMC3062848. https://www.ncbi.nlm.nih.gov/pubmed/20060479
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3062848/pdf/nihms169256.pdf
78. Delorenzo C, Papademetris X, Staib LH, Vives KP, Spencer DD, Duncan JS. Image-guided intraoperative cortical deformation recovery using game theory: application to neocortical epilepsy surgery. IEEE transactions on medical imaging. 2010;29(2):322-38. Epub 2010/02/05. doi: 10.1109/TMI.2009.2027993. PubMed PMID: 20129844; PubMed Central PMCID: PMCPMC2824434. https://www.ncbi.nlm.nih.gov/pubmed/20129844
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2824434/pdf/nihms-172998.pdf
79. DeYoung CG, Hirsh JB, Shane MS, Papademetris X, Rajeevan N, Gray JR. Testing predictions from personality neuroscience. Brain structure and the big five. Psychological science. 2010;21(6):820-8. Epub 2010/05/04. doi: 10.1177/0956797610370159. PubMed PMID: 20435951; PubMed Central PMCID: PMCPMC3049165. https://www.ncbi.nlm.nih.gov/pubmed/20435951
https://journals.sagepub.com/doi/pdf/10.1177/0956797610370159
80. Zhu Y, Papademetris X, Sinusas AJ, Duncan JS. A coupled deformable model for tracking myocardial borders from real-time echocardiography using an incompressibility constraint. Medical image analysis. 2010;14(3):429-48. Epub 2010/03/31. doi: 10.1016/j.media.2010.02.005. PubMed PMID: 20350833; PubMed Central PMCID: PMCPMC4318707. https://www.ncbi.nlm.nih.gov/pubmed/20350833
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4318707/pdf/nihms188185.pdf
81. Jiang Y, Zhuang Z, Sinusas AJ, Papademetris X. Vascular Tree Reconstruction by Minimizing A Physiological Functional Cost. Conf Comput Vis Pattern Recognit Workshops. 2010:178-85. Epub 2011/07/15. doi: 10.1109/CVPRW.2010.5543593. PubMed PMID: 21755061; PubMed Central PMCID: PMCPMC3132942. https://www.ncbi.nlm.nih.gov/pubmed/21755061
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3132942/pdf/nihms301376.pdf
82. Joshi A, Papanastassiou A, Vives KP, Spencer DD, Staib LH, Papademetris X. Light-Sensitive Visualization of Multimodal Data for Neurosurgical Applications. Proc IEEE Int Symp Biomed Imaging. 2010;2010(14-17 April 2010):884-7. Epub 2011/05/10. doi: 10.1109/ISBI.2010.5490128. PubMed PMID: 21552380; PubMed Central PMCID: PMCPMC3086020. https://www.ncbi.nlm.nih.gov/pubmed/21552380
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3086020/pdf/nihms284749.pdf
83. Zhu Y, Papademetris X, Sinusas AJ, Duncan JS. Segmentation of the left ventricle from cardiac MR images using a subject-specific dynamical model. IEEE transactions on medical imaging. 2010;29(3):669-87. Epub 2009/10/01. doi: 10.1109/TMI.2009.2031063. PubMed PMID: 19789107; PubMed Central PMCID: PMCPMC2832728. https://www.ncbi.nlm.nih.gov/pubmed/19789107
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2832728/pdf/nihms-159279.pdf
84. Hampson M, Scheinost D, Qiu M, Bhawnani J, Lacadie CM, Leckman JF, Constable RT, Papademetris X. Biofeedback of real-time functional magnetic resonance imaging data from the supplementary motor area reduces functional connectivity to subcortical regions. Brain Connect. 2011;1(1):91-8. Epub 2011/01/01. doi: 10.1089/brain.2011.0002. PubMed PMID: 22432958; PubMed Central PMCID: PMCPMC3621512. https://www.ncbi.nlm.nih.gov/pubmed/22432958
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3621512/pdf/brain.2011.0002.pdf
85. Ho HP, Wang F, Papademetris X, Blumberg HP, Staib LH. Integrated parcellation and normalization using DTI fasciculography. Medical image computing and computer-assisted intervention : MICCAI International Conference on Medical Image Computing and Computer-Assisted Intervention. 2011;14(Pt 2):33-41. Epub 2011/10/15. doi: 10.1007/978-3-642-23629-7_5. PubMed PMID: 21995010; PubMed Central PMCID: PMCPMC3701295. https://www.ncbi.nlm.nih.gov/pubmed/21995010
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3701295/pdf/nihms476204.pdf
86. Jiang Y, Zhuang ZW, Sinusas AJ, Staib LH, Papademetris X. Vessel connectivity using Murray's hypothesis. Medical image computing and computer-assisted intervention : MICCAI International Conference on Medical Image Computing and Computer-Assisted Intervention. 2011;14(Pt 3):528-36. Epub 2011/10/19. doi: 10.1007/978-3-642-23626-6_65. PubMed PMID: 22003740; PubMed Central PMCID: PMCPMC3367766. https://www.ncbi.nlm.nih.gov/pubmed/22003740
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3367766/pdf/nihms375989.pdf
87. Laufer I, Negishi M, Lacadie CM, Papademetris X, Constable RT. Dissociation between the activity of the right middle frontal gyrus and the middle temporal gyrus in processing semantic priming. PloS one. 2011;6(8):e22368. Epub 2011/08/11. doi: 10.1371/journal.pone.0022368. PubMed PMID: 21829619; PubMed Central PMCID: PMCPMC3150328. https://www.ncbi.nlm.nih.gov/pubmed/21829619
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3150328/pdf/pone.0022368.pdf
88. Granot D, Scheinost D, Markakis EA, Papademetris X, Shapiro EM. Serial monitoring of endogenous neuroblast migration by cellular MRI. NeuroImage. 2011;57(3):817-24. Epub 2011/05/17. doi: 10.1016/j.neuroimage.2011.04.063. PubMed PMID: 21571076; PubMed Central PMCID: PMCPMC3129484. https://www.ncbi.nlm.nih.gov/pubmed/21571076
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3129484/pdf/nihms-300569.pdf
89. Harrington JK, Chahboune H, Criscione JM, Li AY, Hibino N, Yi T, Villalona GA, Kobsa S, Meijas D, Duncan DR, Devine L, Papademetri X, Shin'oka T, Fahmy TM, Breuer CK. Determining the fate of seeded cells in venous tissue-engineered vascular grafts using serial MRI. FASEB J. 2011;25(12):4150-61. Epub 2011/08/19. doi: 10.1096/fj.11-185140. PubMed PMID: 21846838; PubMed Central PMCID: PMCPMC3236630. https://www.ncbi.nlm.nih.gov/pubmed/21846838
https://faseb.onlinelibrary.wiley.com/doi/pdfdirect/10.1096/fj.11-185140?download=true
90. Edmiston EE, Wang F, Kalmar JH, Womer FY, Chepenik LG, Pittman B, Gueorguieva R, Hur E, Spencer L, Staib LH, Constable RT, Fulbright RK, Papademetris X, Blumberg HP. Lateral ventricle volume and psychotic features in adolescents and adults with bipolar disorder. Psychiatry research. 2011;194(3):400-2. Epub 2011/11/02. doi: 10.1016/j.pscychresns.2011.07.005. PubMed PMID: 22041535; PubMed Central PMCID: PMCPMC3225709. https://www.ncbi.nlm.nih.gov/pubmed/22041535
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3225709/pdf/nihms314620.pdf
91. Elhawary H, Liu H, Patel P, Norton I, Rigolo L, Papademetris X, Hata N, Golby AJ. Intraoperative real-time querying of white matter tracts during frameless stereotactic neuronavigation. Neurosurgery. 2011;68(2):506-16; discussion 16. Epub 2010/12/08. doi: 10.1227/NEU.0b013e3182036282. PubMed PMID: 21135719; PubMed Central PMCID: PMCPMC3121103. https://www.ncbi.nlm.nih.gov/pubmed/21135719
92. Jou RJ, Jackowski AP, Papademetris X, Rajeevan N, Staib LH, Volkmar FR. Diffusion tensor imaging in autism spectrum disorders: preliminary evidence of abnormal neural connectivity. Aust N Z J Psychiatry. 2011;45(2):153-62. Epub 2010/12/07. doi: 10.3109/00048674.2010.534069. PubMed PMID: 21128874; PubMed Central PMCID: PMCPMC3123660. https://www.ncbi.nlm.nih.gov/pubmed/21128874
https://journals.sagepub.com/doi/pdf/10.3109/00048674.2010.534069
93. Suh JW, Scheinost D, Dione DP, Dobrucki LW, Sinusas AJ, Papademetris X. A non-rigid registration method for serial lower extremity hybrid SPECT/CT imaging. Medical image analysis. 2011;15(1):96-111. Epub 2010/09/28. doi: 10.1016/j.media.2010.08.002. PubMed PMID: 20869902; PubMed Central PMCID: PMCPMC2988883. https://www.ncbi.nlm.nih.gov/pubmed/20869902
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2988883/pdf/nihms234484.pdf
94. Sahul ZH, Mukherjee R, Song J, McAteer J, Stroud RE, Dione DP, Staib L, Papademetris X, Dobrucki LW, Duncan JS, Spinale FG, Sinusas AJ. Targeted imaging of the spatial and temporal variation of matrix metalloproteinase activity in a porcine model of postinfarct remodeling: relationship to myocardial dysfunction. Circ Cardiovasc Imaging. 2011;4(4):381-91. Epub 2011/04/21. doi: 10.1161/CIRCIMAGING.110.961854. PubMed PMID: 21505092; PubMed Central PMCID: PMCPMC3140564. https://www.ncbi.nlm.nih.gov/pubmed/21505092
https://www.ahajournals.org/doi/pdf/10.1161/CIRCIMAGING.110.961854?download=true
95. Joshi A, Scheinost D, Okuda H, Belhachemi D, Murphy I, Staib LH, Papademetris X. Unified framework for development, deployment and robust testing of neuroimaging algorithms. Neuroinformatics. 2011;9(1):69-84. Epub 2011/01/21. doi: 10.1007/s12021-010-9092-8. PubMed PMID: 21249532; PubMed Central PMCID: PMCPMC3066099. https://www.ncbi.nlm.nih.gov/pubmed/21249532
https://link.springer.com/content/pdf/10.1007/s12021-010-9092-8.pdf
96. Joshi A, Scheinost D, Globinsky R, Vives KP, Spencer DD, Staib LH, Papademetris X. Augmented Inline-Based Navigation for Stereotactic Image Guided Neurosurgery. Proc IEEE Int Symp Biomed Imaging. 2011:1869-72. Epub 2011/03/30. doi: 10.1109/ISBI.2011.5872772. PubMed PMID: 23377314; PubMed Central PMCID: PMCPMC3557840. https://www.ncbi.nlm.nih.gov/pubmed/23377314
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3557840/pdf/nihms284758.pdf
97. Suh JW, Kwon OK, Scheinost D, Sinusas AJ, Cline GW, Papademetris X. Whole Body Nonrigid Ct-Pet Registration Using Weighted Demons. Proc IEEE Int Symp Biomed Imaging. 2011:1223-6. Epub 2011/03/30. doi: 10.1109/isbi.2011.5872622. PubMed PMID: 23377533; PubMed Central PMCID: PMCPMC3557845. https://www.ncbi.nlm.nih.gov/pubmed/23377533
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3557845/pdf/nihms284766.pdf
98. Lu C, Chelikani S, Papademetris X, Knisely JP, Milosevic MF, Chen Z, Jaffray DA, Staib LH, Duncan JS. An integrated approach to segmentation and nonrigid registration for application in image-guided pelvic radiotherapy. Medical image analysis. 2011;15(5):772-85. Epub 2011/06/08. doi: 10.1016/j.media.2011.05.010. PubMed PMID: 21646038; PubMed Central PMCID: PMCPMC3164526. https://www.ncbi.nlm.nih.gov/pubmed/21646038
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3164526/pdf/nihms299278.pdf
99. Martuzzi R, Ramani R, Qiu M, Shen X, Papademetris X, Constable RT. A whole-brain voxel based measure of intrinsic connectivity contrast reveals local changes in tissue connectivity with anesthetic without a priori assumptions on thresholds or regions of interest. NeuroImage. 2011;58(4):1044-50. Epub 2011/07/19. doi: 10.1016/j.neuroimage.2011.06.075. PubMed PMID: 21763437; PubMed Central PMCID: PMCPMC3183817. https://www.ncbi.nlm.nih.gov/pubmed/21763437
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3183817/pdf/nihms-316794.pdf
100. Criscione JM, Dobrucki LW, Zhuang ZW, Papademetris X, Simons M, Sinusas AJ, Fahmy TM. Development and application of a multimodal contrast agent for SPECT/CT hybrid imaging. Bioconjug Chem. 2011;22(9):1784-92. Epub 2011/08/20. doi: 10.1021/bc200162r. PubMed PMID: 21851119; PubMed Central PMCID: PMCPMC3204385. https://www.ncbi.nlm.nih.gov/pubmed/21851119
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101. Duque A, Coman D, Carlyle BC, Bordner KA, George ED, Papademetris X, Hyder F, Simen AA. Neuroanatomical changes in a mouse model of early life neglect. Brain structure & function. 2012;217(2):459-72. Epub 2011/10/11. doi: 10.1007/s00429-011-0350-9. PubMed PMID: 21984312; PubMed Central PMCID: PMCPMC3664301. https://www.ncbi.nlm.nih.gov/pubmed/21984312
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102. DeLorenzo C, Papademetris X, Staib LH, Vives KP, Spencer DD, Duncan JS. Volumetric intraoperative brain deformation compensation: model development and phantom validation. IEEE transactions on medical imaging. 2012;31(8):1607-19. Epub 2012/05/09. doi: 10.1109/TMI.2012.2197407. PubMed PMID: 22562728; PubMed Central PMCID: PMCPMC3600363. https://www.ncbi.nlm.nih.gov/pubmed/22562728
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103. Ho HP, Wang F, Papademetris X, Blumberg HP, Staib LH. Fasciculography: robust prior-free real-time normalized volumetric neural tract parcellation. IEEE transactions on medical imaging. 2012;31(2):217-30. Epub 2011/09/15. doi: 10.1109/TMI.2011.2167629. PubMed PMID: 21914568; PubMed Central PMCID: PMCPMC3640528. https://www.ncbi.nlm.nih.gov/pubmed/21914568
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104. Suh JW, Kwon OK, Scheinost D, Sinusas AJ, Cline GW, Papademetris X. CT-PET weighted image fusion for separately scanned whole body rat. Medical physics. 2012;39(1):533-42. Epub 2012/01/10. doi: 10.1118/1.3672167. PubMed PMID: 22225323; PubMed Central PMCID: PMCPMC3266828. https://www.ncbi.nlm.nih.gov/pubmed/22225323
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105. Hampson M, Stoica T, Saksa J, Scheinost D, Qiu M, Bhawnani J, Pittenger C, Papademetris X, Constable T. Real-time fMRI biofeedback targeting the orbitofrontal cortex for contamination anxiety. Journal of visualized experiments : JoVE. 2012(59). Epub 2012/02/03. doi: 10.3791/3535. PubMed PMID: 22297729; PubMed Central PMCID: PMCPMC3462579. https://www.ncbi.nlm.nih.gov/pubmed/22297729
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106. Scheinost D, Benjamin J, Lacadie CM, Vohr B, Schneider KC, Ment LR, Papademetris X, Constable RT. The intrinsic connectivity distribution: a novel contrast measure reflecting voxel level functional connectivity. NeuroImage. 2012;62(3):1510-9. Epub 2012/06/05. doi: 10.1016/j.neuroimage.2012.05.073. PubMed PMID: 22659477; PubMed Central PMCID: PMCPMC3538880. https://www.ncbi.nlm.nih.gov/pubmed/22659477
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107. Constable RT, Scheinost D, Finn ES, Shen X, Hampson M, Winstanley FS, Spencer DD, Papademetris X. Potential use and challenges of functional connectivity mapping in intractable epilepsy. Front Neurol. 2013;4:39. Epub 2013/06/05. doi: 10.3389/fneur.2013.00039. PubMed PMID: 23734143; PubMed Central PMCID: PMCPMC3660665. https://www.ncbi.nlm.nih.gov/pubmed/23734143
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108. Onofrey JA, Staib LH, Papademetris X. Fast Nonrigid Image Registration Using Statistical Deformation Models Learned from Richly-Annotated Data. Proc IEEE Int Symp Biomed Imaging. 2013:580-3. Epub 2013/01/01. doi: 10.1109/ISBI.2013.6556541. PubMed PMID: 25000401; PubMed Central PMCID: PMCPMC4077025. https://www.ncbi.nlm.nih.gov/pubmed/25000401
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109. Onofrey JA, Staib LH, Papademetris X. Learning nonrigid deformations for constrained multi-modal image registration. Medical image computing and computer-assisted intervention : MICCAI International Conference on Medical Image Computing and Computer-Assisted Intervention. 2013;16(Pt 3):171-8. Epub 2014/02/08. doi: 10.1007/978-3-642-40760-4_22. PubMed PMID: 24505758; PubMed Central PMCID: PMCPMC4044829. https://www.ncbi.nlm.nih.gov/pubmed/24505758
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110. Jaba IM, Zhuang ZW, Li N, Jiang Y, Martin KA, Sinusas AJ, Papademetris X, Simons M, Sessa WC, Young LH, Tirziu D. NO triggers RGS4 degradation to coordinate angiogenesis and cardiomyocyte growth. The Journal of clinical investigation. 2013;123(4):1718-31. Epub 2013/03/05. doi: 10.1172/JCI65112. PubMed PMID: 23454748; PubMed Central PMCID: PMCPMC3613910. https://www.ncbi.nlm.nih.gov/pubmed/23454748
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111. Scheinost D, Stoica T, Saksa J, Papademetris X, Constable RT, Pittenger C, Hampson M. Orbitofrontal cortex neurofeedback produces lasting changes in contamination anxiety and resting-state connectivity. Transl Psychiatry. 2013;3:e250. Epub 2013/05/02. doi: 10.1038/tp.2013.24. PubMed PMID: 23632454; PubMed Central PMCID: PMCPMC3641411. https://www.ncbi.nlm.nih.gov/pubmed/23632454
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112. Constable RT, Vohr BR, Scheinost D, Benjamin JR, Fulbright RK, Lacadie C, Schneider KC, Katz KH, Zhang H, Papademetris X, Ment LR. A left cerebellar pathway mediates language in prematurely-born young adults. NeuroImage. 2013;64:371-8. Epub 2012/09/18. doi: 10.1016/j.neuroimage.2012.09.008. PubMed PMID: 22982585; PubMed Central PMCID: PMCPMC3508203. https://www.ncbi.nlm.nih.gov/pubmed/22982585
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113. Scheinost D, Hampson M, Qiu M, Bhawnani J, Constable RT, Papademetris X. A graphics processing unit accelerated motion correction algorithm and modular system for real-time fMRI. Neuroinformatics. 2013;11(3):291-300. Epub 2013/01/16. doi: 10.1007/s12021-013-9176-3. PubMed PMID: 23319241; PubMed Central PMCID: PMCPMC3644525. https://www.ncbi.nlm.nih.gov/pubmed/23319241
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114. Garrison KA, Scheinost D, Worhunsky PD, Elwafi HM, Thornhill TAt, Thompson E, Saron C, Desbordes G, Kober H, Hampson M, Gray JR, Constable RT, Papademetris X, Brewer JA. Real-time fMRI links subjective experience with brain activity during focused attention. NeuroImage. 2013;81:110-8. Epub 2013/05/21. doi: 10.1016/j.neuroimage.2013.05.030. PubMed PMID: 23684866; PubMed Central PMCID: PMCPMC3729617. https://www.ncbi.nlm.nih.gov/pubmed/23684866
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115. Shen X, Tokoglu F, Papademetris X, Constable RT. Groupwise whole-brain parcellation from resting-state fMRI data for network node identification. NeuroImage. 2013;82:403-15. Epub 2013/06/12. doi: 10.1016/j.neuroimage.2013.05.081. PubMed PMID: 23747961; PubMed Central PMCID: PMCPMC3759540. https://www.ncbi.nlm.nih.gov/pubmed/23747961
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116. Scheinost D, Shen X, Finn E, Sinha R, Constable RT, Papademetris X. Coupled Intrinsic Connectivity Distribution analysis: a method for exploratory connectivity analysis of paired FMRI data. PloS one. 2014;9(3):e93544. Epub 2014/03/29. doi: 10.1371/journal.pone.0093544. PubMed PMID: 24676034; PubMed Central PMCID: PMCPMC3968179. https://www.ncbi.nlm.nih.gov/pubmed/24676034
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3968179/pdf/pone.0093544.pdf
117. Kelley BJ, Harel NY, Kim CY, Papademetris X, Coman D, Wang X, Hasan O, Kaufman A, Globinsky R, Staib LH, Cafferty WB, Hyder F, Strittmatter SM. Diffusion tensor imaging as a predictor of locomotor function after experimental spinal cord injury and recovery. J Neurotrauma. 2014;31(15):1362-73. Epub 2014/05/02. doi: 10.1089/neu.2013.3238. PubMed PMID: 24779685; PubMed Central PMCID: PMCPMC4120934. https://www.ncbi.nlm.nih.gov/pubmed/24779685
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4120934/pdf/neu.2013.3238.pdf
118. Lee HW, Arora J, Papademetris X, Tokoglu F, Negishi M, Scheinost D, Farooque P, Blumenfeld H, Spencer DD, Constable RT. Altered functional connectivity in seizure onset zones revealed by fMRI intrinsic connectivity. Neurology. 2014;83(24):2269-77. Epub 2014/11/14. doi: 10.1212/WNL.0000000000001068. PubMed PMID: 25391304; PubMed Central PMCID: PMCPMC4277677. https://www.ncbi.nlm.nih.gov/pubmed/25391304
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119. Huang X, Dione DP, Compas CB, Papademetris X, Lin BA, Bregasi A, Sinusas AJ, Staib LH, Duncan JS. Contour tracking in echocardiographic sequences via sparse representation and dictionary learning. Medical image analysis. 2014;18(2):253-71. Epub 2013/12/03. doi: 10.1016/j.media.2013.10.012. PubMed PMID: 24292554; PubMed Central PMCID: PMCPMC3946038. https://www.ncbi.nlm.nih.gov/pubmed/24292554
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120. Scheinost D, Papademetris X, Constable RT. The impact of image smoothness on intrinsic functional connectivity and head motion confounds. NeuroImage. 2014;95:13-21. Epub 2014/03/25. doi: 10.1016/j.neuroimage.2014.03.035. PubMed PMID: 24657356; PubMed Central PMCID: PMCPMC4076413. https://www.ncbi.nlm.nih.gov/pubmed/24657356
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4076413/pdf/nihms-579225.pdf
121. Cannon TD, Sun F, McEwen SJ, Papademetris X, He G, van Erp TG, Jacobson A, Bearden CE, Walker E, Hu X, et al. Reliability of neuroanatomical measurements in a multisite longitudinal study of youth at risk for psychosis. Human brain mapping. 2014;35(5):2424-34. Epub 2013/08/29. doi: 10.1002/hbm.22338. PubMed PMID: 23982962; PubMed Central PMCID: PMCPMC3843968. https://www.ncbi.nlm.nih.gov/pubmed/23982962
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3843968/pdf/HBM-35-2424.pdf
122. Finn ES, Shen X, Holahan JM, Scheinost D, Lacadie C, Papademetris X, Shaywitz SE, Shaywitz BA, Constable RT. Disruption of functional networks in dyslexia: a whole-brain, data-driven analysis of connectivity. Biological psychiatry. 2014;76(5):397-404. Epub 2013/10/16. doi: 10.1016/j.biopsych.2013.08.031. PubMed PMID: 24124929; PubMed Central PMCID: PMCPMC3984371. https://www.ncbi.nlm.nih.gov/pubmed/24124929
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123. Onofrey JA, Staib LH, Papademetris X. Segmenting the Brain Surface from CT Images with Artifacts Using Dictionary Learning for Non-rigid MR-CT Registration. Inf Process Med Imaging. 2015;24:662-74. https://www.ncbi.nlm.nih.gov/pubmed/26221711
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124. Ren S, Huang S, Onofrey JA, Papademetris X, Qian X. A Scalable Algorithm for Structured Kernel Feature Selection. Proceedings of the 18th International Conference on Artificial Intelligence and Statistics (AISTATS); 20152015.
125. Onofrey JA, Staib LH, Sarkar S, Venkataraman R, Papademetris X. Learning Nonrigid Deformations for Constrained Point-Based Registration for Image-Guided Mr-Trus Prostate Intervention. Proc IEEE Int Symp Biomed Imaging. 2015;2015:1592-5. Epub 2015/09/26. doi: 10.1109/ISBI.2015.7164184. PubMed PMID: 26405508; PubMed Central PMCID: PMCPMC4578171. https://www.ncbi.nlm.nih.gov/pubmed/26405508
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4578171/pdf/nihms696443.pdf
126. Scheinost D, Finn ES, Tokoglu F, Shen X, Papademetris X, Hampson M, Constable RT. Sex differences in normal age trajectories of functional brain networks. Human brain mapping. 2015;36(4):1524-35. Epub 2014/12/20. doi: 10.1002/hbm.22720. PubMed PMID: 25523617; PubMed Central PMCID: PMCPMC5522589. https://www.ncbi.nlm.nih.gov/pubmed/25523617
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5522589/pdf/HBM-36-1524.pdf
127. Compas CB, Wong EY, Huang X, Sampath S, Lin BA, Pal P, Papademetris X, Thiele K, Dione DP, Stacy M, Staib LH, Sinusas AJ, O'Donnell M, Duncan JS. Correction to "Radial Basis Functions for Combining Shape and Speckle Tracking in 4D Echocardiography". IEEE transactions on medical imaging. 2015;34(2):690. Epub 2015/02/04. doi: 10.1109/TMI.2015.2397791. PubMed PMID: 25647814; PubMed Central PMCID: PMCPMC5572112. https://www.ncbi.nlm.nih.gov/pubmed/25647814
https://ieeexplore.ieee.org/ielx7/42/7027910/07027946.pdf?tp=&arnumber=7027946&isnumber=7027910&ref=
128. Onofrey JA, Papademetris X, Staib LH. Low-Dimensional Non-Rigid Image Registration Using Statistical Deformation Models From Semi-Supervised Training Data. IEEE transactions on medical imaging. 2015;34(7):1522-32. Epub 2015/02/27. doi: 10.1109/TMI.2015.2404572. PubMed PMID: 25720017. https://www.ncbi.nlm.nih.gov/pubmed/25720017
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129. Scheinost D, Lacadie C, Vohr BR, Schneider KC, Papademetris X, Constable RT, Ment LR. Cerebral Lateralization is Protective in the Very Prematurely Born. Cerebral cortex (New York, NY : 1991). 2015;25(7):1858-66. Epub 2014/01/24. doi: 10.1093/cercor/bht430. PubMed PMID: 24451659; PubMed Central PMCID: PMCPMC4459290. https://www.ncbi.nlm.nih.gov/pubmed/24451659
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130. Finn ES, Shen X, Scheinost D, Rosenberg MD, Huang J, Chun MM, Papademetris X, Constable RT. Functional connectome fingerprinting: identifying individuals using patterns of brain connectivity. Nat Neurosci. 2015;18(11):1664-71. Epub 2015/10/13. doi: 10.1038/nn.4135. PubMed PMID: 26457551; PubMed Central PMCID: PMCPMC5008686. https://www.ncbi.nlm.nih.gov/pubmed/26457551
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131. Vasko FJ, Landquist E, Kresge G, Tal A, Jiang Y, Papademetris X. A simple and efficient strategy for solving very large-scale generalized cable-trench problems. Networks. 2016;67(3):199-208. doi: 10.1002/net.21614. http://dx.doi.org/10.1002/net.21614
https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/net.21614?download=true
132. Onofrey JA, Staib LH, Papademetris X. Learning intervention-induced deformations for non-rigid MR-CT registration and electrode localization in epilepsy patients. Neuroimage Clin. 2016;10:291-301. Epub 2016/02/24. doi: 10.1016/j.nicl.2015.12.001. PubMed PMID: 26900569; PubMed Central PMCID: PMCPMC4724039. https://www.ncbi.nlm.nih.gov/pubmed/26900569
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4724039/pdf/main.pdf
133. Li K, Papademetris X, Tucker DM. BrainK for Structural Image Processing: Creating Electrical Models of the Human Head. Comput Intell Neurosci. 2016;2016:1349851. Epub 2016/06/14. doi: 10.1155/2016/1349851. PubMed PMID: 27293419; PubMed Central PMCID: PMCPMC4884832. https://www.ncbi.nlm.nih.gov/pubmed/27293419
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134. Scheinost D, Tokoglu F, Shen X, Finn ES, Noble S, Papademetris X, Constable RT. Fluctuations in Global Brain Activity Are Associated With Changes in Whole-Brain Connectivity of Functional Networks. IEEE transactions on bio-medical engineering. 2016;63(12):2540-9. Epub 2016/08/20. doi: 10.1109/TBME.2016.2600248. PubMed PMID: 27541328; PubMed Central PMCID: PMCPMC5180443. https://www.ncbi.nlm.nih.gov/pubmed/27541328
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5180443/pdf/nihms-831856.pdf
135. Sanganahalli BG, Rebello MR, Herman P, Papademetris X, Shepherd GM, Verhagen JV, Hyder F. Comparison of glomerular activity patterns by fMRI and wide-field calcium imaging: Implications for principles underlying odor mapping. NeuroImage. 2016;126:208-18. Epub 2015/12/04. doi: 10.1016/j.neuroimage.2015.11.048. PubMed PMID: 26631819; PubMed Central PMCID: PMCPMC4733588. https://www.ncbi.nlm.nih.gov/pubmed/26631819
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136. Najt P, Wang F, Spencer L, Johnston JA, Cox Lippard ET, Pittman BP, Lacadie C, Staib LH, Papademetris X, Blumberg HP. Anterior Cortical Development During Adolescence in Bipolar Disorder. Biological psychiatry. 2016;79(4):303-10. Epub 2015/06/03. doi: 10.1016/j.biopsych.2015.03.026. PubMed PMID: 26033826; PubMed Central PMCID: PMCPMC4595154. https://www.ncbi.nlm.nih.gov/pubmed/26033826
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137. Rosenberg MD, Finn ES, Scheinost D, Papademetris X, Shen X, Constable RT, Chun MM. A neuromarker of sustained attention from whole-brain functional connectivity. Nat Neurosci. 2016;19(1):165-71. Epub 2015/11/26. doi: 10.1038/nn.4179. PubMed PMID: 26595653; PubMed Central PMCID: PMCPMC4696892. https://www.ncbi.nlm.nih.gov/pubmed/26595653
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138. Stacy MR, Qiu M, Papademetris X, Caracciolo CM, Constable RT, Sinusas AJ. Application of BOLD Magnetic Resonance Imaging for Evaluating Regional Volumetric Foot Tissue Oxygenation: A Feasibility Study in Healthy Volunteers. Eur J Vasc Endovasc Surg. 2016;51(5):743-9. Epub 2016/03/14. doi: 10.1016/j.ejvs.2016.02.008. PubMed PMID: 26970710; PubMed Central PMCID: PMCPMC4842163. https://www.ncbi.nlm.nih.gov/pubmed/26970710
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139. Noble S, Scheinost D, Finn ES, Shen X, Papademetris X, McEwen SC, Bearden CE, Addington J, Goodyear B, Cadenhead KS, et al. Multisite reliability of MR-based functional connectivity. NeuroImage. 2017;146:959-70. Epub 2016/11/05. doi: 10.1016/j.neuroimage.2016.10.020. PubMed PMID: 27746386; PubMed Central PMCID: PMCPMC5322153. https://www.ncbi.nlm.nih.gov/pubmed/27746386
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140. Scheinost D, Kwon SH, Lacadie C, Vohr BR, Schneider KC, Papademetris X, Constable RT, Ment LR. Alterations in Anatomical Covariance in the Prematurely Born. Cerebral cortex (New York, NY : 1991). 2017;27(1):534-43. Epub 2015/10/24. doi: 10.1093/cercor/bhv248. PubMed PMID: 26494796; PubMed Central PMCID: PMCPMC5939217. https://www.ncbi.nlm.nih.gov/pubmed/26494796
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141. Onofrey JA, Staib LH, Sarkar S, Venkataraman R, Nawaf CB, Sprenkle PC, Papademetris X. Learning Non-rigid Deformations for Robust, Constrained Point-based Registration in Image-Guided MR-TRUS Prostate Intervention. Medical image analysis. 2017;39:29-43. Epub 2017/04/22. doi: 10.1016/j.media.2017.04.001. PubMed PMID: 28431275; PubMed Central PMCID: PMCPMC5514316. https://www.ncbi.nlm.nih.gov/pubmed/28431275
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142. Shen X, Finn ES, Scheinost D, Rosenberg MD, Chun MM, Papademetris X, Constable RT. Using connectome-based predictive modeling to predict individual behavior from brain connectivity. Nat Protoc. 2017;12(3):506-18. Epub 2017/02/10. doi: 10.1038/nprot.2016.178. PubMed PMID: 28182017; PubMed Central PMCID: PMCPMC5526681. https://www.ncbi.nlm.nih.gov/pubmed/28182017
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143. Finn ES, Scheinost D, Finn DM, Shen X, Papademetris X, Constable RT. Can brain state be manipulated to emphasize individual differences in functional connectivity? NeuroImage. 2017;160:140-51. Epub 2017/04/05. doi: 10.1016/j.neuroimage.2017.03.064. PubMed PMID: 28373122. https://www.ncbi.nlm.nih.gov/pubmed/28373122
144. Sadda P, Onofrey JA, Bahtiyar MO, Papademetris X. Better Feature Matching for Placental Panorama Construction. Data Driven Treatment Response Assessment and Preterm, Perinatal, and Paediatric Image Analysis; 2018: Springer International Publishing; 2018. p. 128-37. http://dx.doi.org/10.1007/978-3-030-00807-9_13
https://link.springer.com/chapter/10.1007/978-3-030-00807-9_13
https://link.springer.com/content/pdf/10.1007%2F978-3-030-00807-9_13.pdf
145. Sadda P, Onofrey JA, Papademetris X. Deep Learning Retinal Vessel Segmentation from a Single Annotated Example: An Application of Cyclic Generative Adversarial Neural Networks. Intravascular Imaging and Computer Assisted Stenting and Large-Scale Annotation of Biomedical Data and Expert Label Synthesis; 2018: Springer International Publishing; 2018. p. 82-91. http://dx.doi.org/10.1007/978-3-030-01364-6_10
https://link.springer.com/chapter/10.1007/978-3-030-01364-6_10
146. Johnson MB, Sun X, Kodani A, Borges-Monroy R, Girskis KM, Ryu SC, Wang PP, Patel K, Gonzalez DM, Woo YM, et al. Aspm knockout ferret reveals an evolutionary mechanism governing cerebral cortical size. Nature. 2018;556(7701):370-5. Epub 2018/04/13. doi: 10.1038/s41586-018-0035-0. PubMed PMID: 29643508; PubMed Central PMCID: PMCPMC6095461. https://www.ncbi.nlm.nih.gov/pubmed/29643508
https://www.nature.com/articles/s41586-018-0035-0.pdf
147. Li X, Dvornek NC, Papademetris X, Zhuang J, Staib LH, Ventola P, Duncan JS. 2-Channel Convolutional 3d Deep Neural Network (2cc3d) for Fmri Analysis: Asd Classification and Feature Learning. Proc IEEE Int Symp Biomed Imaging. 2018;2018:1252-5. Epub 2018/04/01. doi: 10.1109/isbi.2018.8363798. PubMed PMID: 32983370; PubMed Central PMCID: PMCPMC7519578. https://www.ncbi.nlm.nih.gov/pubmed/32983370
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148. Chan C, Onofrey J, Jian Y, Germino M, Papademetris X, Carson RE, Liu C. Non-Rigid Event-by-Event Continuous Respiratory Motion Compensated List-Mode Reconstruction for PET. IEEE transactions on medical imaging. 2018;37(2):504-15. Epub 2017/10/14. doi: 10.1109/TMI.2017.2761756. PubMed PMID: 29028189; PubMed Central PMCID: PMCPMC7304524. https://www.ncbi.nlm.nih.gov/pubmed/29028189
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7304524/pdf/nihms-940758.pdf
149. Alvelo JL, Papademetris X, Mena-Hurtado C, Jeon S, Sumpio BE, Sinusas AJ, Stacy MR. Radiotracer Imaging Allows for Noninvasive Detection and Quantification of Abnormalities in Angiosome Foot Perfusion in Diabetic Patients With Critical Limb Ischemia and Nonhealing Wounds. Circ Cardiovasc Imaging. 2018;11(5):e006932. Epub 2018/05/12. doi: 10.1161/CIRCIMAGING.117.006932. PubMed PMID: 29748311; PubMed Central PMCID: PMCPMC5951395. https://www.ncbi.nlm.nih.gov/pubmed/29748311
https://www.ahajournals.org/doi/pdf/10.1161/CIRCIMAGING.117.006932?download=true
150. Sadda P, Onofrey J, Imamoglu M, Papademetris X, Qarni B, Bahtiyar MO. Real-time computerized video enhancement for minimally invasive fetoscopic surgery. Laparosc Endosc Robot Surg. 2018;1(2):27-32. Epub 2019/05/14. doi: 10.1016/j.lers.2018.06.001. PubMed PMID: 31080936; PubMed Central PMCID: PMCPMC6508886. https://www.ncbi.nlm.nih.gov/pubmed/31080936
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6508886/pdf/nihms-1009286.pdf
151. Onofrey JA, Casetti-Dinescu DI, Lauritzen AD, Sarkar S, Venkataraman R, Fan RE, Sonn GA, Sprenkle PC, Staib LH, Papademetris X. Generalizable Multi-Site Training and Testing of Deep Neural Networks Using Image Normalization. Proc IEEE Int Symp Biomed Imaging. 2019;2019:348-51. Epub 2019/04/01. doi: 10.1109/isbi.2019.8759295. PubMed PMID: 32874427; PubMed Central PMCID: PMCPMC7457546. https://www.ncbi.nlm.nih.gov/pubmed/32874427
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7457546/pdf/nihms-1622454.pdf
152. Onofrey JA, Staib LH, Papademetris X. Segmenting the Brain Surface From CT Images With Artifacts Using Locally Oriented Appearance and Dictionary Learning. IEEE transactions on medical imaging. 2019;38(2):596-607. Epub 2018/09/04. doi: 10.1109/TMI.2018.2868045. PubMed PMID: 30176584; PubMed Central PMCID: PMCPMC6476428. https://www.ncbi.nlm.nih.gov/pubmed/30176584
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6476428/pdf/nihms-1520731.pdf
153. Sadda P, Imamoglu M, Dombrowski M, Papademetris X, Bahtiyar MO, Onofrey J. Deep-learned placental vessel segmentation for intraoperative video enhancement in fetoscopic surgery. Int J Comput Assist Radiol Surg. 2019;14(2):227-35. Epub 2018/11/30. doi: 10.1007/s11548-018-1886-4. PubMed PMID: 30484115; PubMed Central PMCID: PMCPMC6438174. https://www.ncbi.nlm.nih.gov/pubmed/30484115
https://link.springer.com/content/pdf/10.1007/s11548-018-1886-4.pdf
154. Boutagy NE, Ravera S, Papademetris X, Onofrey JA, Zhuang ZW, Wu J, Feher A, Stacy MR, French BA, Annex BH, Carrasco N, Sinusas AJ. Noninvasive In Vivo Quantification of Adeno-Associated Virus Serotype 9-Mediated Expression of the Sodium/Iodide Symporter Under Hindlimb Ischemia and Neuraminidase Desialylation in Skeletal Muscle Using Single-Photon Emission Computed Tomography/Computed Tomography. Circ Cardiovasc Imaging. 2019;12(7):e009063. Epub 2019/07/13. doi: 10.1161/CIRCIMAGING.119.009063. PubMed PMID: 31296047; PubMed Central PMCID: PMCPMC6629470. https://www.ncbi.nlm.nih.gov/pubmed/31296047
https://www.ahajournals.org/doi/pdf/10.1161/CIRCIMAGING.119.009063?download=true
155. Zhuang J, Dvornek N, Li X, Tatikonda S, Papademetris X, Duncan J. Adaptive Checkpoint Adjoint Method for Gradient Estimation in Neural ODE. Proc Mach Learn Res. 2020;119:11639-49. Epub 2020/01/01. PubMed PMID: 34308361; PubMed Central PMCID: PMCPMC8299461. https://www.ncbi.nlm.nih.gov/pubmed/34308361
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8299461/pdf/nihms-1632246.pdf
156. Lake EMR, Ge X, Shen X, Herman P, Hyder F, Cardin JA, Higley MJ, Scheinost D, Papademetris X, Crair MC, Constable RT. Simultaneous cortex-wide fluorescence Ca(2+) imaging and whole-brain fMRI. Nat Methods. 2020;17(12):1262-71. Epub 2020/11/04. doi: 10.1038/s41592-020-00984-6. PubMed PMID: 33139894; PubMed Central PMCID: PMCPMC7704940. https://www.ncbi.nlm.nih.gov/pubmed/33139894
https://www.nature.com/articles/s41592-020-00984-6.pdf
157. Onofrey JA, Staib LH, Huang X, Zhang F, Papademetris X, Metaxas D, Rueckert D, Duncan JS. Sparse Data-Driven Learning for Effective and Efficient Biomedical Image Segmentation. Annu Rev Biomed Eng. 2020;22:127-53. Epub 2020/03/15. doi: 10.1146/annurev-bioeng-060418-052147. PubMed PMID: 32169002. https://www.ncbi.nlm.nih.gov/pubmed/32169002
https://www.annualreviews.org/doi/pdf/10.1146/annurev-bioeng-060418-052147
158. Liu C, Smolka S, Papademetris X, Minh DD, Gan G, Deng Y, Lin M, Chapiro J, Wang X, Georgiades C, Hong K. Predicting Infiltrative Hepatocellular Carcinoma Patient Outcome Post-TACE: MR Bias Field Correction Effect on 3D-quantitative Image Analysis. J Clin Transl Hepatol. 2020;8(3):292-8. Epub 2020/10/22. doi: 10.14218/JCTH.2020.00054. PubMed PMID: 33083252; PubMed Central PMCID: PMCPMC7562808. https://www.ncbi.nlm.nih.gov/pubmed/33083252
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7562808/pdf/JCTH-8-292.pdf
159. Zhuang J, Dvornek N, Tatikonda S, Papademetris X, Ventola P, Duncan JS. Multiple-Shooting Adjoint Method for Whole-Brain Dynamic Causal Modeling. Information Processing in Medical Imaging; 2021: Springer International Publishing; 2021. p. 58-70. http://dx.doi.org/10.1007/978-3-030-78191-0_5
https://link.springer.com/chapter/10.1007/978-3-030-78191-0_5
https://scholar.google.ca/scholar?cluster=5076419210576619441&hl=en&as_sdt=0,5&sciodt=0,5
https://link.springer.com/content/pdf/10.1007%2F978-3-030-78191-0_5.pdf
160. Chou TH, Alvelo JL, Janse S, Papademetris X, Sumpio BE, Mena-Hurtado C, Sinusas AJ, Stacy MR. Prognostic Value of Radiotracer-Based Perfusion Imaging in Critical Limb Ischemia Patients Undergoing Lower Extremity Revascularization. JACC Cardiovasc Imaging. 2021;14(8):1614-24. Epub 2020/11/23. doi: 10.1016/j.jcmg.2020.09.033. PubMed PMID: 33221224; PubMed Central PMCID: PMCPMC8113329. https://www.ncbi.nlm.nih.gov/pubmed/33221224
161. Ghani MA, Fereydooni A, Chen E, Letzen B, Laage-Gaupp F, Nezami N, Deng Y, Gan G, Thakur V, Lin M, Papademetris X, Schernthaner RE, Huber S, Chapiro J, Hong K, Georgiades C. Identifying enhancement-based staging markers on baseline MRI in patients with colorectal cancer liver metastases undergoing intra-arterial tumor therapy. Eur Radiol. 2021. Epub 2021/06/02. doi: 10.1007/s00330-021-08058-7. PubMed PMID: 34061209. https://www.ncbi.nlm.nih.gov/pubmed/34061209
https://link.springer.com/content/pdf/10.1007/s00330-021-08058-7.pdf
Non-Peer Reviewed Publications (Chapters, Preprints, Online Articles)
1. Papademetris X. Estimation of 3D Left Ventricular Deformation from Medical Images using Biomechanical Models. New Haven CT.: Yale University; 2000. http://noodle.med.yale.edu/thesis
2. Papademetris X, Duncan JS. Cardiac Image Analysis: Motion and Deformation. SPIE Handbook on Medical Imaging - Volume III: Medical Image Processing and Analysis: SPIE; 2000.
3. Papademetris X, Duncan JS. Computational Platforms for Integrated Image Analysis. In: Amini AA, Prince JL, editors. Measurement of Cardiac Deformation from MRI: Physical and Mathematical Models: Kluwer; 2001.
4. Papademetris X, Skrinjar O, Duncan JS. Recovering Displacements and Deformations from 3D Medical Images Using Biomechanical Models. In Handbook of Numerical Analysis, Special Volume: Models for the Human Body: Elsevier Scientific; 2004.
5. Papademetris X, Jackowski M, Rajeevan N, Constable RT, Staib LH. BioImage Suite: An integrated medical image analysis suite. Insight J. 2005;1(3):13. http://www.insight-journal.org/handle/1926/37, http://www.insight-journal.org/midas/handle/1926/37
6. DiStasio M, Vives K, Papademetris X. The Bioimage Suite DataTree tool: Enabling flexible realtime surgical visualizations. The Insight Journal-2006 MICCAI Open Science Workshop; 2006: researchgate.net; 2006. https://www.researchgate.net/profile/Marcello-Distasio/publication/28358731_The_BioImage_Suite_Datatree_Tool_Enabling_Flexible_Realtime_Surgical_Visualizations/links/5661bd3b08ae418a7867de10/The-BioImage-Suite-Datatree-Tool-Enabling-Flexible-Realtime-Surgical-Visualizations.pdf
7. Papademetris X. Medical Image Analysis with VTK: A Tutorial. Insight J. 2006. https://www.insight-journal.org/download/pdf/2228/
8. Papademetris X, Jackowski MP, Rajeevan N, DiStasio M, Okuda H, Constable RT, Staib LH. BioImage Suite: An integrated medical image analysis suite: An update. Insight J. 2006;2006:209. Epub 2006/01/01. PubMed PMID: 25364771; PubMed Central PMCID: PMCPMC4213804. https://www.ncbi.nlm.nih.gov/pubmed/25364771,
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4213804/pdf/nihms178052.pdf
9. Alpoge L, Joshi A, Scheinost D, Onofrey J, Qian X, Papademetris X. A VTK-based, CUDA-optimized Non-Parametric Vessel Detection Method. VTK Journal. 2010. (See also this New York Times editorial.)
10. Lauritzen AD, Papademetris X, Turovets S, Onofrey JA. Evaluation of CT Image Synthesis Methods:From Atlas-based Registration to Deep Learning. arXiv [physicsmed-ph]. 2019. http://arxiv.org/abs/1906.04467 , https://scholar.google.ca/scholar?cluster=740776844255087976&hl=en&as_sdt=0,5&sciodt=0,5
11. Zhuang JT, Tang T, Ding YF, Tatikonda S, Dvornek N, Papademetris X, Duncan JS. AdaBelief Optimizer: Adapting Stepsizes by the Belief in Observed Gradients. Advances in Neural Information Processing Systems (Neurips 2020). 2020;33. PubMed PMID: WOS:000627697000029. <Go to ISI>://WOS:000627697000029
12. Papademetris X, Quraishi AN, Licholai GP. Introduction to Medical Software: Foundations for Digital Health, Devices and Diagnostics: Cambridge University Press; 2022.